Program blastn blastp blastx tblastn tblastx
DataSet No DataSet selected. (Please choose one). ---------------------------------------------------------------- Aiptasia pallida (AIPP) ---------------------------------------------------------------- AIPP_EST_100104 AIPP_CAP3_100104 ---------------------------------------------------------------- Acropora digitifera (ADIG) ---------------------------------------------------------------- ADIG_T-CDS_111201 ADIG_G-CDS_111201 ADIG_G-PEP_111201 ---------------------------------------------------------------- Acropora millepora (AMIL) ---------------------------------------------------------------- AMIL_EST_100104 AMIL_CAP3_100104 AMIL_T-PEP_051019 ---------------------------------------------------------------- Acropora palmata (APAL) ---------------------------------------------------------------- APAL_EST_100104 APAL_CAP3_100104 ---------------------------------------------------------------- Amphimedon quennslandica (AQUE) ---------------------------------------------------------------- AQUE_EST_100104 AQUE_CAP3_100104 ---------------------------------------------------------------- Anemonia viridis (AVIR) ---------------------------------------------------------------- AVIR_EST_100104 AVIR_CAP3_100104 ---------------------------------------------------------------- Aplysia californica (ACAL) ---------------------------------------------------------------- ACAL_EST_070214 ---------------------------------------------------------------- Biomphalaria glabrata (BGLA) ---------------------------------------------------------------- BGLA_EST_080206 ---------------------------------------------------------------- Branchiostoma floridae (BFLO) ---------------------------------------------------------------- BFLO_EST_070215 BFLO_G-PEP_111130 ---------------------------------------------------------------- Clytia hemisphaerica (CHEM) ---------------------------------------------------------------- CHEM_EST_100104 CHEM_CAP3_100104 ---------------------------------------------------------------- Daphnia magna (DMAG) ---------------------------------------------------------------- DMAG_EST_080206 ---------------------------------------------------------------- Daphnia pulex (DPUL) ---------------------------------------------------------------- DPUL_EST_070214 ---------------------------------------------------------------- Dugesia japonica (DJAP) ---------------------------------------------------------------- DJAP_EST_080205 ---------------------------------------------------------------- Dugesia ryukyuensis (DRYU) ---------------------------------------------------------------- DRYU_EST_080205 ---------------------------------------------------------------- Ephydatia muelleri (EMUE) ---------------------------------------------------------------- EMUE_T-CDS_130911 EMUE_T-PEP_130911 ---------------------------------------------------------------- Hydra magnipapillata sf-1 (HMAGsf1) ---------------------------------------------------------------- HMAGsf1_EST_070214 HMAGsf1_CAP3_070829 ---------------------------------------------------------------- Hydra magnapapillata (HMAG) ---------------------------------------------------------------- HMAG_EST_070214 HMAG_CAP3_051019 HMAG_T-CDS_051019 HMAG_T-PEP_051019 HMAG_G-PEP_111130 ---------------------------------------------------------------- Hydra viridissima (HVIR) ---------------------------------------------------------------- Not available. ---------------------------------------------------------------- Hydra vulgaris (HVUL) ---------------------------------------------------------------- HVUL_EST_080121 HVUL_CAP3_080206 ---------------------------------------------------------------- Hydra vulgaris AEP (HAEP) ---------------------------------------------------------------- HAEP_EST_070214 HAEP_CAP3_070829 HAEP_T-CDS_120217 ---------------------------------------------------------------- Hydractinia echinata (HECH) ---------------------------------------------------------------- HECH_EST_070214 ---------------------------------------------------------------- Litopenaeus vannamei (LVAN) ---------------------------------------------------------------- LVAN_EST_070215 ---------------------------------------------------------------- Macrostomum lignano (MLIG) ---------------------------------------------------------------- MLIG_EST_080205 ---------------------------------------------------------------- Metridium senile (MSEN) ---------------------------------------------------------------- MSEN_EST_080121 MSEN_CAP3_080206 ---------------------------------------------------------------- Mnemiopsis leidyi (MLEI) ---------------------------------------------------------------- MLEI_EST_100104 MLEI_CAP3_100104 ---------------------------------------------------------------- Molgula tectiformis (MTEC) ---------------------------------------------------------------- MTEC_EST_070215 ---------------------------------------------------------------- Monosiga brevicollis (MBRE) ---------------------------------------------------------------- Not available. ---------------------------------------------------------------- Monosiga ovata (MOVA) ---------------------------------------------------------------- MOVA_EST_080121 MOVA_CAP3_080206 ---------------------------------------------------------------- Montastrea faveolata (MFAV) ---------------------------------------------------------------- MFAV_EST_100104 MFAV_CAP3_100104 ---------------------------------------------------------------- Nematostella vectensis (NVEC) ---------------------------------------------------------------- NVEC_EST_070214 NVECut_EST_070214 [Technau Lab] NVEC_CAP3_060314 NVEC_G-PEP_111130 ---------------------------------------------------------------- Oscarella carmela (OCAR) ---------------------------------------------------------------- OCAR_CAP3_100104 OCAR_EST_100104 OCAR_T-CDS_130911 OCAR_T-PEP_130911 OCAR_WGA_120614 OCAR_G-PEP_120614 ---------------------------------------------------------------- Oscarella sp. (Osp.) ---------------------------------------------------------------- Osp._T-CDS_120614 ---------------------------------------------------------------- Penaeus monodon (PMON) ---------------------------------------------------------------- PMON_EST_070214 ---------------------------------------------------------------- Petromyzon marinus (PMAR) ---------------------------------------------------------------- PMAR_EST_070214 ---------------------------------------------------------------- Pleurobrachia pileus (PPIL) ---------------------------------------------------------------- PPIL_EST_100104 PPIL_CAP3_100104 ---------------------------------------------------------------- Porites astreoides (PAST) ---------------------------------------------------------------- PAST_EST_100104 PAST_CAP3_100104 ---------------------------------------------------------------- Porites lobata (PLOB) ---------------------------------------------------------------- Not available. ---------------------------------------------------------------- Strongylocntrotus purpuratus (SPUR) ---------------------------------------------------------------- SPUR_EST_080206 ---------------------------------------------------------------- Trichoplax adhaerens (TADH) ---------------------------------------------------------------- TADH_EST_080121 TADH_CAP3_080206 ----------------------------------------------------------------
Enter sequence below in FASTA format: Or load it from disk
Set subsequence: From To
The query sequence is filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
Graphical Overview Alignment view Pairwise master-slave with identities master-slave without identities flat master-slave with identities flat master-slave without identities BLAST XML Hit Table
Descriptions 0 10 50 100 250 500 Alignments 0 10 50 100 250 500 Color schema No color schema Color schema 1 Color schema 2 Color schema 3 Color schema 4 Color schema 5 Color schema 6
